Source code for cobra_component_models.orm.compartment_annotation
# Copyright (c) 2019, Moritz E. Beber.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Provide a compartment annotation ORM model."""
from sqlalchemy import Column, ForeignKey, Integer, UniqueConstraint
from .base import Base
from .mixin import AnnotationMixin
[docs]class CompartmentAnnotation(AnnotationMixin, Base):
"""
Define a compartment annotation ORM model.
Attributes
----------
compartment_id : int
The compartment being annotated.
"""
__tablename__ = "compartment_annotations"
compartment_id: int = Column(Integer, ForeignKey("compartments.id"), nullable=False)
__table_args__ = (UniqueConstraint("compartment_id", "namespace_id", "identifier"),)
[docs] def __repr__(self):
"""Return a string representation of the object."""
return (
f"{type(self).__name__}(compartment={self.compartment_id}, "
f"identifier={self.identifier}, "
f"namespace={self.namespace_id}, "
f"qualifier={self.biology_qualifier_id})"
)